eRankPPI

 
 
standalone
 

An algorithm to identify near-native conformations generated by protein docking using monomer experimental structures and computer-generated models. The scoring function implemented in eRankPPI employs multiple features including interface probability estimates calculated by eFindSitePPI and a novel contact-based symmetry score.

  
eRankPPI
If you use eRankPPI, please cite the following papers:
1 Maheshwari S, Brylinski M. (2015) Predicted binding site information improves model ranking in protein docking using experimental and computer-generated target structures. BMC Struct Biol 15 (1): 23.     
2 Maheshwari S, Brylinski M. (2017) Across-proteome modeling of dimer structures for the bottom-up assembly of protein-protein interaction networks. BMC Bioinformatics 18 (1): 257.